PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g04370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 460aa    MW: 50480.8 Da    PI: 5.8787
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g04370.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.7e-15224273355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Vradi02g04370.1 224 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 273
                      9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0012131193IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-8156189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-7158188IPR001471AP2/ERF domain
PROSITE profilePS510329.677158187IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-18222283IPR016177DNA-binding domain
CDDcd000185.17E-25222283No hitNo description
Gene3DG3DSA:3.30.730.102.4E-18223282IPR001471AP2/ERF domain
PROSITE profilePS5103219.375223281IPR001471AP2/ERF domain
SMARTSM003808.6E-33223287IPR001471AP2/ERF domain
PfamPF008471.1E-9224273IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
LINTHSSNEV PKVADFLGVS KSENQSELAA LNEIQSNDSD YLFTNNSLVP LQNPVVDTPS  60
NEYQENANSN LQSLTLSMGS GKDSTCETSG ENSTNTVEAA PRRTLDTFDI DGLEGMKLTF  120
GIIAVEGKDN QEKDAKFLEV ENQTTKCIVF LLLFIISGGY DKEEKAARAY DLAALKYWGT  180
STTTNFPISN YEKELDEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI  240
GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKAI LESNTLPIGG  300
GAAKRLKEAQ ALESSRKREE MIALGSSTFQ YGTSSSSRLH AYPLMQHHQF EQPQPLLTLQ  360
NHDMSSHFSH QDPLHQGYIQ TQLQLHQQSG VSSYLQNNPQ FYGGYLQNHP ALLQGMMNMG  420
SSSSSSVLEN NNNNNSNVGG FAAGSGFGMA SNPSSGNAT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00368DAPTransfer from AT3G20840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493562.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ5YGP81e-148PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBLA0A0S3SD980.0A0A0S3SD98_PHAAN; Uncharacterized protein
STRINGGLYMA12G06010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49423152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-136AP2 family protein